Before you go any further, I should note that you are making a mistake.
Your L/R looks like it's high-passed at 80Hz, and you only have ONE subwoofer. This means that you will only have one bass source in your room below 80Hz. This is generally a bad idea. Welti's paper says you need minimum 2, preferably 4. The more bass sources you have, the flatter the response, and the more even the coverage over a listening area. It might be better to NOT high-pass your main speakers, and simply apply a LPF to the sub at 80Hz.
Having said that, your bass looks pretty flat in this SINGLE measurement from ONE listening position. That might be OK if it's for one listener only. Read this very carefully: we can only time align the subwoofer to a single measurement from a single position. But we generally take spatially averaged measurements for bass correction.
A more ideal solution would be to allow your main speakers to play full range, then phase align the subwoofer to the combined response (i.e. L+R). You will need to centre the microphone for that measurement (see
my book for a microphone centring procedure, you want Book 2). Then take a spatially averaged measurement and use that as basis for DSP.
Why don't you give that alignment tool a go. It's easy to use and has a brilliant and intuitive design.
You didn't ask this question, but I thought I should bring it to your attention. See the main impulse at 7ms, then all the spikes at 15ms, 22ms, 29ms, etc? Those are very loud flutter echoes. I am generally hesitant to recommend room treatment, but this is probably what you need. My book will tell you how to diagnose the cause of these echoes (see the section on the ETC and the Wavelet section in the Spectrogram). The appearance of your measurement suggests that you have a pretty bare room (small volume, flutter echoes, high-ish T30). You can worry about this later. Tackle problems one at a time.