Funny you mention JTR as my ultimate LFE channel setup would be dual cap4000's. Not really that bad of a cost for what your getting too.
Yes his subwoofers are a great value for what they are. Most of us with AV NIRVANA happen to know Jeff one way or another and know him to be a standup guy. I really like his products.
I heard a pair of his speakers in a shootout of sorts a few years back and it was by far the best sounding speaker of the bunch. There were also Triton Ones and Klipsch Reference speakers in the grouping. I don't believe anyone preferred either of those to the JTR's. They were all played in a level matched format back to back, so volume/dynamics were not the issue. The JTR just sounded better. I can also attest to it not being a bias due to cost, most of the people in attendance didn't want the JTR to sound better because they were more expensive than most of the other speakers. Unfortunately for all of us, the performance gap was undeniable.
I've heard lots of great speakers of different design ilk. Skip (Audiothesis) carries a line of audiophile speakers of fairly conventional dynamic driver design approach. The bookshelf I heard sounded magnificent, with (to date) among the very best sound staging I've ever heard. I've heard top of the line McIntosh speakers (giant Line Arrays), Klipsch, Polk, SVS, Gedlees, JTR's, Magnepan, Revel Ultima Salon's, Sonus Fabre Amati Homage, Focal Utopia's (I owned these), etc. I've heard many of these for fairly extended periods of time in good rooms with excellent equipment and familiar music. What I can say is that they all sounded different and each had their merits (at least among the better speakers). One reality came out of this though, if you want realistic dynamic range and headroom for things like cinema reference levels, high efficiency speakers are a must. That meant that when I looked for my ideal speaker, I wanted high efficiency, but not at the expense of good sound. There are a number of high efficiency speakers on the market that can achieve the high dynamic range, but I do not think they offer audiophile sound. I find them flawed and compromised. However, there are a handful that are not just good, I think they are the best sounding speakers on the market (weighing all these different criteria of accurate tonality, smooth response, high output, low distortion, good pattern control, etc.). The best speaker I've ever heard remains the Gedlee Summa (no longer in production as noted). I like my own Abbeys (a size smaller) quite a bit (let's call them the second best sounding speaker I've ever heard). In a similar ilk I have now also heard the JTR's and JBL M2's and find them to be similarly great sounding. We can call them 3rd best sounding, but admittedly we are talking about very small differences and the JTR and M2 have more bass and other advantages I like, they really are more like a different great speaker, rather than 3rd best. Next to that, my favorites are the Revel Ultima Salons.
I think speakers are where you should spend the most money, but I also think that speakers, because they make the biggest sound difference, are a very personal thing. You have to have something you love.